Astronaut John Crichton attempts to use the Earth's atmosphere to propel his module at high speeds but is hit by a radiation wave and is sucked through a wormhole into a distant part of the universe.

A locator beacon, automatically broadcasting its exact location to any Peacekeeper forces in the area, is discovered inextricably fused into Moya's neural nexus.

The crew rescues a scientist and his assistant from a disintegrating ship. Crichton starts seeing the future, which holds death for the crew and Moya. He tries to influence the course of events but cannot change the outcome until they all learn what their guests are truly hiding.

Rygel is captured and held for ransom by some bounty hunters. Rygel "borrowed" a crystal from Moya, without the crystal Moya cannot maintain her orbit and will crash into the planet if it isn't returned shortly.

After finding the legendary Peacekeeper battleship, Zelbinion, dead in space and emptied of most of its useful technologies Crichton, Aeryn, and D'Argo find a Peacekeeper tech under Crais's command, Gilina, who survived a raid on the ship. Under threat of another scavenger attack, they work to get the shield generator on board the Zelbinion working. As they share the work, Gilina and Crichton grow much closer.

The crew visits a planet full of happy workers. Soon D'Argo and Zhaan start working and refuse to return to the ship. Meanwhile Rygel's body fluids become explosive and Aeryn and Pilot must learn why before Rygel dies.

A peacekeeper beacon goes off and Moya has to land on an alien planet to prevent its signal being intercepted and Moya being discovered.

Crichton's spirit is captured by Maldis. The sorcerer thrives on vengeance and hate, he brings Crais's spirit down. And the two spirits battle. Zhaan can fight Maldis, but if she fights Maldis, she must take a dark path.

A scientist extracts DNA from several of Moya's crew, promising them that with it he would be able to use it to find the location of their home planets. Things get more interesting however when he asks for some of pilot.

During routine searches for Peacekeeper beacons, D'Argo falls down a chute, destroys a Peacekeeper shield and gets ejected into open space.

While flying Crichton's ship near a sun with high flare activity, John and Aeryn narrowly avoid getting sucked into an unstable wormhole.

Aeryn takes Crichton out in a transport pod for flying lessons but unfortunately they get stuck in the Flax, a space trap.

The crew finds a colony of Delvians. Z'haan goes down to be with her own people for a while, but one of them wants something from Z'haan and will do almost anything to take it from her.

Crichton is left behind in Farscape One when Moya suddenly starbursts as a result of her pregnancy.

When a Starburst goes badly wrong, Moya collides with a Nebari ship. On board is Durka, Rygel's former torturer, who has been mind cleansed and now serves the Nebari.

When Moya travels to an unstable wormhole that appears to lead to Earth, Crichton leaves on Farscape One in the hopes of returning home.

Moya tries to starburst to prove to the crew that she still can. It goes slightly wrong though and she gets stuck in starburst and split into several different dimensions.

A peacekeeper ship is approaching Moya, so Crichton and Aeryn pose as peacekeeper officers on a secret mission while everyone else gets locked into cells to make the deception seem realistic.

Aeryn has been critically wounded. She needs some tissue samples to heal. The only source is the Secret base the Peacekeeper mentioned. Crichton and Chiana go to the base, to get the samples. They encounter an old friend, and a new enemy.

Scorpius attempts to extract the wormhole technology from Crichton's mind, while Aeryn mounts a rescue operation. Crais finds himself at Scorpius' mercy, and Moya gives birth.

The crew find a planetoid that's a botanical paradise. Occupied by a scientist and a peaceful girl. But one is a killer. And there's more to this paradise than they realized. One of them wants Zhaan for their own agenda.

With death approaching in the form of Peacekeeper search parties, those aboard Moya say their final goodbyes, and share a last feast together, before enacting a plan to save Moya and her baby, named Talyn.